[
  {
    "id": "F-01",
    "title": "Lines have a measurable positional structure",
    "claim": "Certain written forms occur preferentially at line beginnings. The measured pattern also survives line boundaries detected from scan ink.",
    "observation": "Certain written forms occur preferentially at line beginnings. The measured pattern also survives line boundaries detected from scan ink.",
    "interpretation": null,
    "type": "observation",
    "disposition": "TRIANGULATED; standing",
    "scope": "Tested transcriptions, physical-line measurements and comparison texts.",
    "limitations": [
      "A physical line is not established as a sentence or instruction. Comparisons do not cover every prose or verse tradition.",
      "The line-start vocabulary is separable from verse corpora at 500 or more lines, but not from single short verse hands."
    ],
    "alternatives": [
      "Writing conventions, layout and line-conditioned production can all contribute."
    ],
    "folios": [
      "f1v"
    ],
    "evidence": [
      {
        "text": "Canonical finding or disposition for F-01; use the recorded locator and version.",
        "ref": "upstream:workflow/FINDINGS-GRAPH.yaml",
        "sha256": "1a362f3cf312ccf24c6d0d2fb6a3dd37deb7a66d2d6e61f1fc7dd942f8472172",
        "line": 53,
        "locator": "  F-01:",
        "canonical_id": "F-01"
      },
      {
        "text": "Preserved supporting artifact upstream:results_s18.txt; exact version is identified by its digest.",
        "ref": "upstream:results_s18.txt",
        "sha256": "d5e4ac070700624b848b6ba82997031c5087d7419a8fb9d7e860cf7e2bbb79a0",
        "canonical_id": "F-01"
      },
      {
        "text": "Preserved measurement output (results_r1.txt) supporting this story within the stated scope; shared inputs are not independent confirmations.",
        "ref": "upstream:runs/roach-r1r2-raw/results_r1.txt",
        "sha256": "3fc342864e3ce7a431fb91fd7c83931d66cc44288a37feb425adb4adda097d66",
        "canonical_id": "F-01"
      },
      {
        "text": "Preserved supporting artifact upstream:results_s45.txt; exact version is identified by its digest.",
        "ref": "upstream:results_s45.txt",
        "sha256": "dc8db28afb6e816ad4e291bc99172ac214996445bde55bb740a043f89c163cf5",
        "canonical_id": "F-01"
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    ],
    "sources": [
      {
        "label": "Yale, Beinecke MS 408",
        "url": "https://collections.library.yale.edu/catalog/2002046",
        "kind": "catalogue"
      },
      {
        "label": "Prescott Currier (1976), Papers on the Voynich Manuscript",
        "url": "https://www.voynich.nu/extra/curr_main.html",
        "kind": "published"
      }
    ],
    "images": [
      {
        "folio": "f1v",
        "iiif_service": "https://collections.library.yale.edu/iiif/2/1006077",
        "region_or_null": null,
        "role": "context only; not a measured or annotated experimental region"
      }
    ],
    "numbers": [],
    "relationships": [
      {
        "from": "F-01",
        "to": "F-04",
        "type": "shared_source",
        "evidence_ref": {
          "ref": "upstream:workflow/FINDINGS-GRAPH.yaml",
          "sha256": "1a362f3cf312ccf24c6d0d2fb6a3dd37deb7a66d2d6e61f1fc7dd942f8472172",
          "line": 104,
          "locator": "  F-04:"
        }
      }
    ],
    "corrections": [],
    "decision_ids": [],
    "reproduction": {
      "mode": "read-only source inspection; no experiment run by this package",
      "instructions": "Open the linked evidence copies or excerpts to check the cited wording and measurements. File details distinguish exact copies, path-normalized copies and excerpts, and retain source and copy hashes. Some cited files remain private and are marked as such. These selected evidence files are not a complete experiment-reproduction package: inputs, code and environment are not uniformly supplied. No experiment was rerun to prepare this export.",
      "artifacts": [
        {
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          "sha256": "1a362f3cf312ccf24c6d0d2fb6a3dd37deb7a66d2d6e61f1fc7dd942f8472172",
          "line": 53,
          "locator": "  F-01:"
        },
        {
          "ref": "upstream:results_s18.txt",
          "sha256": "d5e4ac070700624b848b6ba82997031c5087d7419a8fb9d7e860cf7e2bbb79a0"
        },
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          "ref": "upstream:runs/roach-r1r2-raw/results_r1.txt",
          "sha256": "3fc342864e3ce7a431fb91fd7c83931d66cc44288a37feb425adb4adda097d66"
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          "ref": "upstream:results_s45.txt",
          "sha256": "dc8db28afb6e816ad4e291bc99172ac214996445bde55bb740a043f89c163cf5"
        }
      ]
    },
    "dependence": "Transcriptions, catalogue entries and copied summaries are not independent confirmations. Repeated use of the manuscript and pipeline is shared evidence.",
    "attribution": "Simone Systems Research: Jon directing AI-assisted research; retain original authors and run owners in the cited artifacts. Currier previously described differing line-initial and line-final symbol frequencies; this project does not claim that observation as new.",
    "license": "No redistribution license asserted for laboratory artifacts. Third-party content is linked, not bundled.",
    "release_clearance": "cleared",
    "release_reason": "Selected Atlas publication authorized by Jon on 2026-10-19; existing scientific disposition unchanged. Source links, attribution, corrections and selected evidence copies retained; private archive excluded.",
    "visual_spec": "Show the cited folio as context with this claim and its limitation. Do not add semantic labels."
  },
  {
    "id": "F-03",
    "title": "Neighbouring word edges are linked",
    "claim": "The last written symbol of one word and the first of the next show ordering dependencies, strongest in Currier B. Some short Latin verse comparisons also reach this range.",
    "observation": "The last written symbol of one word and the first of the next show ordering dependencies, strongest in Currier B. Some short Latin verse comparisons also reach this range.",
    "interpretation": null,
    "type": "observation",
    "disposition": "TRIANGULATED; standing",
    "scope": "Adjacent glyphs across transcription word spaces; A/B and size-matched comparisons.",
    "limitations": [
      "This does not identify a cipher, language or meaning. A skewed edge table can produce this feature."
    ],
    "alternatives": [
      "A production convention, metrical constraint or encoding could produce edge dependencies."
    ],
    "folios": [
      "f75r"
    ],
    "evidence": [
      {
        "text": "Canonical finding or disposition for F-03; use the recorded locator and version.",
        "ref": "upstream:workflow/FINDINGS-GRAPH.yaml",
        "sha256": "1a362f3cf312ccf24c6d0d2fb6a3dd37deb7a66d2d6e61f1fc7dd942f8472172",
        "line": 88,
        "locator": "  F-03:",
        "canonical_id": "F-03"
      },
      {
        "text": "Preserved supporting artifact upstream:results_s20.txt; exact version is identified by its digest.",
        "ref": "upstream:results_s20.txt",
        "sha256": "2ff48c950069ecef5e521846b303dc408537212ec09f349814516c22d25fa6b0",
        "canonical_id": "F-03"
      },
      {
        "text": "Preserved measurement output (results_r2.txt) supporting this story within the stated scope; shared inputs are not independent confirmations.",
        "ref": "upstream:runs/roach-r1r2-raw/results_r2.txt",
        "sha256": "c2f676e09353a50f0b7d5c733fc75dcd08e1aedb52370a148efac7838143858f",
        "canonical_id": "F-03"
      }
    ],
    "sources": [
      {
        "label": "Yale, Beinecke MS 408",
        "url": "https://collections.library.yale.edu/catalog/2002046",
        "kind": "catalogue"
      },
      {
        "label": "Prescott Currier (1976), Papers on the Voynich Manuscript",
        "url": "https://www.voynich.nu/extra/curr_main.html",
        "kind": "published"
      },
      {
        "label": "Emma May Smith and Marco Ponzi (2019), Glyph combinations across word breaks in the Voynich manuscript (closed access)",
        "url": "https://doi.org/10.1080/01611194.2019.1596998",
        "kind": "published"
      }
    ],
    "images": [
      {
        "folio": "f75r",
        "iiif_service": "https://collections.library.yale.edu/iiif/2/1006208",
        "region_or_null": null,
        "role": "context only; not a measured or annotated experimental region"
      }
    ],
    "numbers": [],
    "relationships": [],
    "corrections": [],
    "decision_ids": [],
    "reproduction": {
      "mode": "read-only source inspection; no experiment run by this package",
      "instructions": "Open the linked evidence copies or excerpts to check the cited wording and measurements. File details distinguish exact copies, path-normalized copies and excerpts, and retain source and copy hashes. Some cited files remain private and are marked as such. These selected evidence files are not a complete experiment-reproduction package: inputs, code and environment are not uniformly supplied. No experiment was rerun to prepare this export.",
      "artifacts": [
        {
          "ref": "upstream:workflow/FINDINGS-GRAPH.yaml",
          "sha256": "1a362f3cf312ccf24c6d0d2fb6a3dd37deb7a66d2d6e61f1fc7dd942f8472172",
          "line": 88,
          "locator": "  F-03:"
        },
        {
          "ref": "upstream:results_s20.txt",
          "sha256": "2ff48c950069ecef5e521846b303dc408537212ec09f349814516c22d25fa6b0"
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          "ref": "upstream:runs/roach-r1r2-raw/results_r2.txt",
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        }
      ]
    },
    "dependence": "Transcriptions, catalogue entries and copied summaries are not independent confirmations. Repeated use of the manuscript and pipeline is shared evidence.",
    "attribution": "Simone Systems Research: Jon directing AI-assisted research; retain original authors and run owners in the cited artifacts. Neighbouring-word edge restrictions were reported by Currier and studied by Smith and Ponzi. These are prior-work credits, not claims that this project independently reproduced their studies.",
    "license": "No redistribution license asserted for laboratory artifacts. Third-party content is linked, not bundled.",
    "release_clearance": "cleared",
    "release_reason": "Selected Atlas publication authorized by Jon on 2026-10-19; existing scientific disposition unchanged. Source links, attribution, corrections and selected evidence copies retained; private archive excluded.",
    "visual_spec": "Show the cited folio as context with this claim and its limitation. Do not add semantic labels."
  },
  {
    "id": "F-04",
    "title": "Word lengths have a rhythm within lines",
    "claim": "Neighbouring word lengths within lines are related. The tested within-line rhythm is not unique to Voynich: Kalevala verse also reproduces it.",
    "observation": "Neighbouring word lengths within lines are related. The tested within-line rhythm is not unique to Voynich: Kalevala verse also reproduces it.",
    "interpretation": null,
    "type": "observation",
    "disposition": "TRIANGULATED; standing",
    "scope": "Within-line word-length statistic; distinct from identical-core repetition across line returns.",
    "limitations": [
      "Structural, not semantic. Prior research already measured word-length autocorrelation; first-ever novelty is not established."
    ],
    "alternatives": [
      "Metrical line filling remains a live comparison."
    ],
    "folios": [
      "f1v"
    ],
    "evidence": [
      {
        "text": "Canonical finding or disposition for F-04; use the recorded locator and version.",
        "ref": "upstream:workflow/FINDINGS-GRAPH.yaml",
        "sha256": "1a362f3cf312ccf24c6d0d2fb6a3dd37deb7a66d2d6e61f1fc7dd942f8472172",
        "line": 104,
        "locator": "  F-04:",
        "canonical_id": "F-04"
      },
      {
        "text": "Current-at-export findings summary, including qualifications that supersede older narrative wording.",
        "ref": "upstream:workflow/FINDINGS-MAP.md",
        "sha256": "48490bea38a296a988c7b2488d324d0364d275c7bbb73278d85a502d96b7e061",
        "line": 13,
        "locator": "Not unique: Kalevala",
        "canonical_id": "F-04"
      },
      {
        "text": "Preserved supporting artifact upstream:results_s21.txt; exact version is identified by its digest.",
        "ref": "upstream:results_s21.txt",
        "sha256": "56a470fae7d8719fae49f923d46d682075f1654ee8c1c1274de89355a40fc7e5",
        "canonical_id": "F-04"
      },
      {
        "text": "Preserved measurement output (results_r3.txt) supporting this story within the stated scope; shared inputs are not independent confirmations.",
        "ref": "upstream:runs/roach-r3/results_r3.txt",
        "sha256": "1f8faa33ba825d45bbaf1d0fe2bbd9da29f7d0811c973988f29459d1fca41cc4",
        "canonical_id": "F-04"
      },
      {
        "text": "Accepted blind comparison showing that Kalevala verse reproduces the tested within-line rhythm; limits claims of uniqueness.",
        "ref": "upstream:runs/roach-r12/results_r12.txt",
        "sha256": "22848098795dba54a872b63161b671b976729130982daed37145259a482c2911",
        "canonical_id": "F-04"
      },
      {
        "text": "Preserved supporting artifact upstream:results_s45.txt; exact version is identified by its digest.",
        "ref": "upstream:results_s45.txt",
        "sha256": "dc8db28afb6e816ad4e291bc99172ac214996445bde55bb740a043f89c163cf5",
        "canonical_id": "F-04"
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    ],
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      {
        "label": "Yale, Beinecke MS 408",
        "url": "https://collections.library.yale.edu/catalog/2002046",
        "kind": "catalogue"
      }
    ],
    "images": [
      {
        "folio": "f1v",
        "iiif_service": "https://collections.library.yale.edu/iiif/2/1006077",
        "region_or_null": null,
        "role": "context only; not a measured or annotated experimental region"
      }
    ],
    "numbers": [],
    "relationships": [],
    "corrections": [
      {
        "supersedes_id": "F-04.graph.statement.control-universality",
        "what_changed": "The old graph sentence that no verse control reproduces it is superseded by accepted r12 and the current map summary; source graph preserved unchanged.",
        "ref": {
          "ref": "upstream:workflow/FINDINGS-MAP.md",
          "sha256": "48490bea38a296a988c7b2488d324d0364d275c7bbb73278d85a502d96b7e061",
          "line": 13,
          "locator": "Not unique: Kalevala"
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      }
    ],
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    "reproduction": {
      "mode": "read-only source inspection; no experiment run by this package",
      "instructions": "Open the linked evidence copies or excerpts to check the cited wording and measurements. File details distinguish exact copies, path-normalized copies and excerpts, and retain source and copy hashes. Some cited files remain private and are marked as such. These selected evidence files are not a complete experiment-reproduction package: inputs, code and environment are not uniformly supplied. No experiment was rerun to prepare this export.",
      "artifacts": [
        {
          "ref": "upstream:workflow/FINDINGS-GRAPH.yaml",
          "sha256": "1a362f3cf312ccf24c6d0d2fb6a3dd37deb7a66d2d6e61f1fc7dd942f8472172",
          "line": 104,
          "locator": "  F-04:"
        },
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          "ref": "upstream:workflow/FINDINGS-MAP.md",
          "sha256": "48490bea38a296a988c7b2488d324d0364d275c7bbb73278d85a502d96b7e061",
          "line": 13,
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      ]
    },
    "dependence": "Transcriptions, catalogue entries and copied summaries are not independent confirmations. Repeated use of the manuscript and pipeline is shared evidence.",
    "attribution": "Simone Systems Research: Jon directing AI-assisted research; retain original authors and run owners in the cited artifacts.",
    "license": "No redistribution license asserted for laboratory artifacts. Third-party content is linked, not bundled.",
    "release_clearance": "cleared",
    "release_reason": "Selected Atlas publication authorized by Jon on 2026-10-19; existing scientific disposition unchanged. Source links, attribution, corrections and selected evidence copies retained; private archive excluded.",
    "visual_spec": "Show the cited folio as context with this claim and its limitation. Do not add semantic labels."
  },
  {
    "id": "F-19",
    "title": "Many transcribed spaces have a physical ink counterpart",
    "claim": "Scan measurements agree strongly with certain transcribed word spaces. Ambiguous comma boundaries occupy an intermediate gap range.",
    "observation": "Scan measurements agree strongly with certain transcribed word spaces. Ambiguous comma boundaries occupy an intermediate gap range.",
    "interpretation": null,
    "type": "observation",
    "disposition": "TRIANGULATED; standing",
    "scope": "The reported aligned ink-gap samples and certain-space labels, not every disputed boundary.",
    "limitations": [
      "A visible space does not establish pronunciation, lexical meaning or a universal word unit."
    ],
    "alternatives": [
      "Some uncertain boundaries may represent joining, separation or pen movement."
    ],
    "folios": [
      "f1v"
    ],
    "evidence": [
      {
        "text": "Canonical finding or disposition for F-19; use the recorded locator and version.",
        "ref": "upstream:workflow/FINDINGS-GRAPH.yaml",
        "sha256": "1a362f3cf312ccf24c6d0d2fb6a3dd37deb7a66d2d6e61f1fc7dd942f8472172",
        "line": 407,
        "locator": "  F-19:",
        "canonical_id": "F-19"
      },
      {
        "text": "Preserved supporting artifact upstream:results_s47.txt; exact version is identified by its digest.",
        "ref": "upstream:results_s47.txt",
        "sha256": "46059261fc3a9e8aca404fbd71330040594b3459ec4e096294b9f735717973ef",
        "line": 78,
        "locator": "P1 kappa_certain",
        "canonical_id": "F-19"
      },
      {
        "text": "Preserved supporting artifact upstream:results_p4u1_space_regimes.txt; exact version is identified by its digest.",
        "ref": "upstream:results_p4u1_space_regimes.txt",
        "sha256": "638ac652aa6eab553c035f99c3301d3424960d80a62b15a72fe8f808b8b5cd82",
        "canonical_id": "F-19"
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    "sources": [
      {
        "label": "Yale, Beinecke MS 408",
        "url": "https://collections.library.yale.edu/catalog/2002046",
        "kind": "catalogue"
      }
    ],
    "images": [
      {
        "folio": "f1v",
        "iiif_service": "https://collections.library.yale.edu/iiif/2/1006077",
        "region_or_null": null,
        "role": "context only; not a measured or annotated experimental region"
      }
    ],
    "numbers": [
      {
        "label": "Agreement kappa for certain spaces",
        "value": 0.8662,
        "ref": {
          "ref": "upstream:results_s47.txt",
          "sha256": "46059261fc3a9e8aca404fbd71330040594b3459ec4e096294b9f735717973ef",
          "line": 78,
          "locator": "P1 kappa_certain"
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    "relationships": [],
    "corrections": [],
    "decision_ids": [],
    "reproduction": {
      "mode": "read-only source inspection; no experiment run by this package",
      "instructions": "Open the linked evidence copies or excerpts to check the cited wording and measurements. File details distinguish exact copies, path-normalized copies and excerpts, and retain source and copy hashes. Some cited files remain private and are marked as such. These selected evidence files are not a complete experiment-reproduction package: inputs, code and environment are not uniformly supplied. No experiment was rerun to prepare this export.",
      "artifacts": [
        {
          "ref": "upstream:workflow/FINDINGS-GRAPH.yaml",
          "sha256": "1a362f3cf312ccf24c6d0d2fb6a3dd37deb7a66d2d6e61f1fc7dd942f8472172",
          "line": 407,
          "locator": "  F-19:"
        },
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          "ref": "upstream:results_s47.txt",
          "sha256": "46059261fc3a9e8aca404fbd71330040594b3459ec4e096294b9f735717973ef",
          "line": 78,
          "locator": "P1 kappa_certain"
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        }
      ]
    },
    "dependence": "Transcriptions, catalogue entries and copied summaries are not independent confirmations. Repeated use of the manuscript and pipeline is shared evidence.",
    "attribution": "Simone Systems Research: Jon directing AI-assisted research; retain original authors and run owners in the cited artifacts.",
    "license": "No redistribution license asserted for laboratory artifacts. Third-party content is linked, not bundled.",
    "release_clearance": "cleared",
    "release_reason": "Selected Atlas publication authorized by Jon on 2026-10-19; existing scientific disposition unchanged. Source links, attribution, corrections and selected evidence copies retained; private archive excluded.",
    "visual_spec": "Show the cited folio as context with this claim and its limitation. Do not add semantic labels."
  },
  {
    "id": "F-20",
    "title": "Tested plant-label links remain unsupported, with a corrected evidence base",
    "claim": "The retained plant-label and repeated-label tests do not support the particular text links they tested. D-086 removes the erroneous s53 text-partner tests; the separate s53 image-matching run is unaffected.",
    "observation": "The retained plant-label and repeated-label tests do not support the particular text links they tested. D-086 removes the erroneous s53 text-partner tests; the separate s53 image-matching run is unaffected.",
    "interpretation": null,
    "type": "observation",
    "disposition": "CORROBORATED; standing",
    "scope": "Specific partner-page and label tests; not a test of all possible text–picture relationships.",
    "limitations": [
      "The s128 power estimate applies to its planted naming-link model. A null result does not show that labels or the manuscript lack meaning. Visual partners share manuscript and folio dependencies."
    ],
    "alternatives": [
      "Labels may index something other than plant names, use a transformation not tested, or refer to a different textual level."
    ],
    "folios": [
      "f99r"
    ],
    "evidence": [
      {
        "text": "Canonical finding or disposition for F-20; use the recorded locator and version.",
        "ref": "upstream:workflow/FINDINGS-GRAPH.yaml",
        "sha256": "1a362f3cf312ccf24c6d0d2fb6a3dd37deb7a66d2d6e61f1fc7dd942f8472172",
        "line": 422,
        "locator": "  F-20:",
        "canonical_id": "F-20"
      },
      {
        "text": "Governing correction or disposition: | D-086 |. This governs interpretation of earlier results.",
        "ref": "upstream:.inventory/registers/DECISIONS.md",
        "sha256": "9b0f6a628e5390fa0928eff8cbdc770fe5fda4992953f99afcf55f5c417c1670",
        "line": 92,
        "locator": "| D-086 |",
        "canonical_id": "F-20"
      },
      {
        "text": "Preserved supporting artifact upstream:results_s54.txt; exact version is identified by its digest.",
        "ref": "upstream:results_s54.txt",
        "sha256": "518fa6a469b430d80e2d719f24bf6c1d908fa8ecbd3766c4611894736a653363",
        "canonical_id": "F-20"
      },
      {
        "text": "Preserved supporting artifact upstream:results_s128_20261019T090659.txt; exact version is identified by its digest.",
        "ref": "upstream:results_s128_20261019T090659.txt",
        "sha256": "da321ff5e453e29dad496f01820c873ae4a9413ffb392a8784eaba6569604c12",
        "canonical_id": "F-20"
      },
      {
        "text": "Exact implementation version (upstream:s53_p4a1_p4e1_anchors_and_errors.py); consult its associated protocol and frozen inputs before reproduction.",
        "ref": "upstream:s53_p4a1_p4e1_anchors_and_errors.py",
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      {
        "text": "Preserved supporting artifact upstream:results_s53_p4a1_p4e1_anchors_and_errors.txt; exact version is identified by its digest.",
        "ref": "upstream:results_s53_p4a1_p4e1_anchors_and_errors.txt",
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        "canonical_id": "F-20"
      },
      {
        "text": "Frozen protocol or digest record for the cited run; retained to establish the planned scope.",
        "ref": "upstream:s53_p4a1_p4e1_anchors_and_errors.prereg.sha256",
        "sha256": "a931e2b35bc8f524fa16b700dbd0f324275657ab85581b7f637b8280a20312da",
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      },
      {
        "text": "Exact implementation version (upstream:s53_same_plant_parts.py); consult its associated protocol and frozen inputs before reproduction.",
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      {
        "text": "Preserved supporting artifact upstream:results_s53.txt; exact version is identified by its digest.",
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      {
        "text": "Frozen protocol or digest record for the cited run; retained to establish the planned scope.",
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        "label": "Jorge Stolfi, Note 091: Repeated plant drawings",
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        "label": "René Zandbergen, pharmaceutical section catalogue",
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      {
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      "mode": "read-only source inspection; no experiment run by this package",
      "instructions": "Open the linked evidence copies or excerpts to check the cited wording and measurements. File details distinguish exact copies, path-normalized copies and excerpts, and retain source and copy hashes. Some cited files remain private and are marked as such. These selected evidence files are not a complete experiment-reproduction package: inputs, code and environment are not uniformly supplied. No experiment was rerun to prepare this export.",
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    "attribution": "Simone Systems Research: Jon directing AI-assisted research; retain original authors and run owners in the cited artifacts. Published plant-resemblance judgments are credited to René Zandbergen and Jorge Stolfi; the Atlas claims no plant identification. Petersen supplied the historical marginal-note comparison included in the source catalogue; it is not an independently confirmed identity.",
    "license": "No redistribution license asserted for laboratory artifacts. Third-party content is linked, not bundled.",
    "release_clearance": "cleared",
    "release_reason": "Selected Atlas publication authorized by Jon on 2026-10-19; existing scientific disposition unchanged. Source links, attribution, corrections and selected evidence copies retained; private archive excluded.",
    "visual_spec": "Show the cited folio as context with this claim and its limitation. Do not add semantic labels."
  },
  {
    "id": "P-87",
    "title": "Preserving whole lines changes the cross-line repetition conclusion",
    "claim": "The old cross-line core-repetition deficit does not persist against the line-preserving comparison on the tested inputs. It no longer discriminates between explanations on that basis.",
    "observation": "The old cross-line core-repetition deficit does not persist against the line-preserving comparison on the tested inputs. It no longer discriminates between explanations on that basis.",
    "interpretation": null,
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    "disposition": "Accepted bounded correction in P-87 / L-377; no novelty or decipherment claim",
    "scope": "The exact three 22,500-token s87-amendment inputs; learned cores; 1,000 permutations per null.",
    "limitations": [
      "Not equivalence or proof that every avoidance mechanism is absent. These truncations are not the full manuscript. The independent audit reimplemented counts and analytic expectations, not the Monte Carlo draws."
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      "The old token shuffle disrupts line-edge composition; whole-line reordering preserves more than just edge vocabulary."
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        "text": "Canonical finding or disposition for P-87; use the recorded locator and version.",
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        "line": 1435,
        "locator": "  P-87:",
        "canonical_id": "P-87"
      },
      {
        "text": "Filed correction L-377: the line-preserving comparison changes the old cross-line discriminator.",
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        "line": 340,
        "locator": "| L-377 |",
        "canonical_id": "P-87"
      },
      {
        "text": "Frozen protocol or digest record for the cited run; retained to establish the planned scope.",
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      },
      {
        "text": "Exact implementation version (run.py); consult its associated protocol and frozen inputs before reproduction.",
        "ref": "lab:runs/db-s-core-return-20261019/run.py",
        "sha256": "b52c57df0b98c31dcb77f4b225294b590241bddb7fed7c2d11a6b310c8abb1fb",
        "canonical_id": "P-87"
      },
      {
        "text": "Frozen code and input versions for the cross-line comparison; no rerun performed for this export.",
        "ref": "lab:runs/db-s-core-return-20261019/freeze.json",
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        "canonical_id": "P-87"
      },
      {
        "text": "Preserved synthetic-check output for the cross-line comparison, not manuscript evidence.",
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        "sha256": "e9271657a2d76cbda24453d2b141c81b4e19d92ca9bf98a2bbcb803020fcb206",
        "canonical_id": "P-87"
      },
      {
        "text": "Preserved measurement output (results.json) supporting this story within the stated scope; shared inputs are not independent confirmations.",
        "ref": "lab:runs/db-s-core-return-20261019/results.json",
        "sha256": "6227f8f0e6b98f893a25a1106b52a2633f9e278ce5ae9f8c0c14da566a4232a2",
        "canonical_id": "P-87"
      },
      {
        "text": "Independent reconstruction of counts and analytic expectations; the Monte Carlo draws were not independently regenerated.",
        "ref": "lab:runs/db-s-core-return-20261019/AUDIT.md",
        "sha256": "a5998876fb59917d63ae1a4e0a6dd4f9a1c63dd9e485572e02c6cb237b26e6b3",
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      {
        "text": "Original cross-line report with scope and prior-art limits; its early acceptance-status header predates the filed disposition.",
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      {
        "text": "Exact implementation version (audit_check.py); consult its associated protocol and frozen inputs before reproduction.",
        "ref": "lab:runs/db-s-core-return-20261019/audit_check.py",
        "sha256": "7e09205214dc2ea418ef1619f4752dbc375c44ef3680fe48f119d4ff308ef477",
        "canonical_id": "P-87"
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      {
        "text": "Preserved audit-check output; not a new replication performed by the Atlas.",
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        "what_changed": "Withdraw the discriminator based solely on the old comparison; within-line reuse and F-04 word-length rhythm remain separate. The historical report header predates canonical acceptance.",
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      "instructions": "Open the linked evidence copies or excerpts to check the cited wording and measurements. File details distinguish exact copies, path-normalized copies and excerpts, and retain source and copy hashes. Some cited files remain private and are marked as such. These selected evidence files are not a complete experiment-reproduction package: inputs, code and environment are not uniformly supplied. No experiment was rerun to prepare this export.",
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    "dependence": "Transcriptions, catalogue entries and copied summaries are not independent confirmations. Repeated use of the manuscript and pipeline is shared evidence.",
    "attribution": "Simone Systems Research: Jon directing AI-assisted research; retain original authors and run owners in the cited artifacts.",
    "license": "No redistribution license asserted for laboratory artifacts. Third-party content is linked, not bundled.",
    "release_clearance": "cleared",
    "release_reason": "Selected Atlas publication authorized by Jon on 2026-10-19; existing scientific disposition unchanged. Source links, attribution, corrections and selected evidence copies retained; private archive excluded.",
    "visual_spec": "Three bars for ZL3b observed count and the two null means; explicitly label means as reference distributions, not predictions or confidence percentages. Include all-three-input table via source."
  },
  {
    "id": "ATLAS-GROUP102",
    "title": "Seven visual correspondences occupy one physical folio",
    "claim": "Seven stronger catalogue correspondences used in the grouped-body proposal all target panels of physical folio 102. They are not seven independent physical units.",
    "observation": "Seven stronger catalogue correspondences used in the grouped-body proposal all target panels of physical folio 102. They are not seven independent physical units.",
    "interpretation": null,
    "type": "observation",
    "disposition": "Eligibility closed; no scoring; proposal not restarted",
    "scope": "The selected stronger catalogue correspondences, not a newly scored visual-matching experiment.",
    "limitations": [
      "These are attributed visual judgments, not decoded names or confirmed species identifications. Eligibility closed without scoring.",
      "The linked composite scan provides recto context only. The f102v1 correspondence is not illustrated by it; no panel boundaries or matching boxes are asserted."
    ],
    "alternatives": [
      "Weaker catalogue similarities are a different selection and cannot be silently pooled."
    ],
    "folios": [
      "f102r1",
      "f102r2",
      "f102v1"
    ],
    "evidence": [
      {
        "text": "Preserved supporting artifact lab:KNOWN_ANSWER_VISUAL_SEMANTIC_CONTROL_CHECKPOINT_2026-10-19.md; exact version is identified by its digest.",
        "ref": "lab:KNOWN_ANSWER_VISUAL_SEMANTIC_CONTROL_CHECKPOINT_2026-10-19.md",
        "sha256": "e537a5a39c484c72360e5ba34289797ee96171d8552e547cf0c459219dfe14e3",
        "line": 527,
        "locator": "Read current primary catalogue",
        "canonical_id": "ATLAS-GROUP102"
      },
      {
        "text": "Preserved supporting artifact lab:KNOWN_ANSWER_VISUAL_SEMANTIC_CONTROL_CHECKPOINT_2026-10-19.md; exact version is identified by its digest.",
        "ref": "lab:KNOWN_ANSWER_VISUAL_SEMANTIC_CONTROL_CHECKPOINT_2026-10-19.md",
        "sha256": "e537a5a39c484c72360e5ba34289797ee96171d8552e547cf0c459219dfe14e3",
        "line": 531,
        "locator": "Decision on proposed grouped-body bridge",
        "canonical_id": "ATLAS-GROUP102"
      },
      {
        "text": "Governing correction or disposition: | D-086 |. This governs interpretation of earlier results.",
        "ref": "upstream:.inventory/registers/DECISIONS.md",
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        "line": 92,
        "locator": "| D-086 |",
        "canonical_id": "ATLAS-GROUP102"
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    ],
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        "label": "Yale, Beinecke MS 408",
        "url": "https://collections.library.yale.edu/catalog/2002046",
        "kind": "catalogue"
      },
      {
        "label": "Zandbergen, pharmaceutical section catalogue",
        "url": "https://www.voynich.nu/q19/index.html",
        "kind": "catalogue"
      },
      {
        "label": "Jorge Stolfi, Note 091: Repeated plant drawings",
        "url": "https://ic.unicamp.br/~stolfi/voynich/Notes/091/report/report_091.html",
        "kind": "published"
      }
    ],
    "images": [
      {
        "folio": "f102r",
        "iiif_service": "https://collections.library.yale.edu/iiif/2/1006251",
        "region_or_null": null,
        "role": "context only; not scored and not a cropped identification region",
        "caption": "101v (part) and 102r",
        "alt": "Yale composite scan labelled 101v (part) and 102r, provided as context for the recto panels.",
        "attribution": "Yale University, Beinecke Rare Book and Manuscript Library, MS 408",
        "reuse": "Authoritative source link; any local derivative and reuse check belong to the website owner."
      }
    ],
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        "type": "shared_source",
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          "locator": "| D-086 |"
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    "reproduction": {
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      "instructions": "Open the linked evidence copies or excerpts to check the cited wording and measurements. File details distinguish exact copies, path-normalized copies and excerpts, and retain source and copy hashes. Some cited files remain private and are marked as such. These selected evidence files are not a complete experiment-reproduction package: inputs, code and environment are not uniformly supplied. No experiment was rerun to prepare this export.",
      "artifacts": [
        {
          "ref": "lab:KNOWN_ANSWER_VISUAL_SEMANTIC_CONTROL_CHECKPOINT_2026-10-19.md",
          "sha256": "e537a5a39c484c72360e5ba34289797ee96171d8552e547cf0c459219dfe14e3",
          "line": 527,
          "locator": "Read current primary catalogue"
        },
        {
          "ref": "lab:KNOWN_ANSWER_VISUAL_SEMANTIC_CONTROL_CHECKPOINT_2026-10-19.md",
          "sha256": "e537a5a39c484c72360e5ba34289797ee96171d8552e547cf0c459219dfe14e3",
          "line": 531,
          "locator": "Decision on proposed grouped-body bridge"
        },
        {
          "ref": "upstream:.inventory/registers/DECISIONS.md",
          "sha256": "9b0f6a628e5390fa0928eff8cbdc770fe5fda4992953f99afcf55f5c417c1670",
          "line": 92,
          "locator": "| D-086 |"
        }
      ]
    },
    "dependence": "Transcriptions, catalogue entries and copied summaries are not independent confirmations. Repeated use of the manuscript and pipeline is shared evidence.",
    "attribution": "Simone Systems Research: Jon directing AI-assisted research; retain original authors and run owners in the cited artifacts. Published plant-resemblance judgments are credited to René Zandbergen and Jorge Stolfi; the Atlas claims no plant identification.",
    "license": "No redistribution license asserted for laboratory artifacts. Third-party content is linked, not bundled.",
    "release_clearance": "cleared",
    "release_reason": "Selected Atlas publication authorized by Jon on 2026-10-19; existing scientific disposition unchanged. Source links, attribution, corrections and selected evidence copies retained; private archive excluded.",
    "visual_spec": "Group seven labelled correspondence arrows beneath a single physical-folio-102 bracket; distinguish recto/verso panels. Do not imply seven independent discoveries.",
    "correspondences": [
      {
        "panel": "f102r1",
        "fragment": 203,
        "herbal": "f37v",
        "certainty": "catalogue stronger resemblance, not identity proven",
        "proposers": [
          "René Zandbergen",
          "Jorge Stolfi"
        ]
      },
      {
        "panel": "f102r1",
        "fragment": 204,
        "herbal": "f1v",
        "certainty": "catalogue stronger resemblance, not identity proven",
        "proposers": [
          "René Zandbergen",
          "Jorge Stolfi"
        ]
      },
      {
        "panel": "f102r2",
        "fragment": 205,
        "herbal": "f47v",
        "certainty": "catalogue stronger resemblance, not identity proven",
        "proposers": [
          "René Zandbergen",
          "Jorge Stolfi"
        ]
      },
      {
        "panel": "f102r2",
        "fragment": 206,
        "herbal": "f32v",
        "certainty": "catalogue stronger resemblance, not identity proven",
        "proposers": [
          "René Zandbergen",
          "Jorge Stolfi"
        ]
      },
      {
        "panel": "f102r2",
        "fragment": 212,
        "herbal": "f18v",
        "certainty": "catalogue stronger resemblance, not identity proven",
        "proposers": [
          "René Zandbergen",
          "Jorge Stolfi"
        ]
      },
      {
        "panel": "f102r2",
        "fragment": 213,
        "herbal": "f23r",
        "certainty": "catalogue stronger resemblance, not identity proven",
        "proposers": [
          "René Zandbergen",
          "Jorge Stolfi"
        ]
      },
      {
        "panel": "f102v1",
        "fragment": 240,
        "herbal": "f19r",
        "certainty": "catalogue stronger resemblance, not identity proven",
        "proposers": [
          "René Zandbergen",
          "Jorge Stolfi"
        ]
      }
    ]
  },
  {
    "id": "c-586",
    "title": "A successful calibration is not a Voynich identification",
    "claim": "db-S141 was accepted for calibration of a graph-matching rule on the labelled Penn LJS 419 and Sloane 4016 galleries. No Voynich page was scored or identified.",
    "observation": "db-S141 was accepted for calibration of a graph-matching rule on the labelled Penn LJS 419 and Sloane 4016 galleries. No Voynich page was scored or identified.",
    "interpretation": null,
    "type": "observation",
    "disposition": "Accepted only for Penn/Sloane calibration; no Voynich use",
    "scope": "Mutual-top-five non-bijective graph rule; Penn/Sloane labelled galleries.",
    "limitations": [
      "Representation B was already selected using Penn/Sloane. LJS 419 is in the proposed alchemical-herbal sub-tradition; unrelated-family transfer is not demonstrated. Historical pending Egerton actions in the audit do not override the later parked disposition."
    ],
    "alternatives": [
      "Within-gallery calibration success may not transfer to a new manuscript or full-gallery identity assignment."
    ],
    "folios": [],
    "evidence": [
      {
        "text": "Registered result and accepted scope for c-586; scientific acceptance is separate from publication clearance.",
        "ref": "upstream:.inventory/registers/CLAIMS.md",
        "sha256": "d9e9bc473ef516f25c3a311fea9bb30fce3cf55da957c2eaf677d596a57470ba",
        "line": 648,
        "locator": "| `c-586` |",
        "canonical_id": "c-586"
      },
      {
        "text": "Existing package audit: Penn/Sloane calibration scope, prior representation selection, and q99-versus-maximum correction.",
        "ref": "lab:codex_lab/reviews/db_s141_package_intake_audit_2026-10-19.md",
        "sha256": "4026d5ec05fccc3313b4990c79c569cb79200ed56c98245cf4f76c7ecbb00d30",
        "canonical_id": "c-586"
      }
    ],
    "sources": [],
    "images": [],
    "numbers": [
      {
        "label": "Recovered identities",
        "value": 13,
        "ref": {
          "ref": "upstream:.inventory/registers/CLAIMS.md",
          "sha256": "d9e9bc473ef516f25c3a311fea9bb30fce3cf55da957c2eaf677d596a57470ba",
          "line": 648,
          "locator": "| `c-586` |"
        }
      },
      {
        "label": "Null q99",
        "value": 3,
        "ref": {
          "ref": "upstream:.inventory/registers/CLAIMS.md",
          "sha256": "d9e9bc473ef516f25c3a311fea9bb30fce3cf55da957c2eaf677d596a57470ba",
          "line": 648,
          "locator": "| `c-586` |"
        }
      },
      {
        "label": "Null maximum",
        "value": 5,
        "ref": {
          "ref": "upstream:.inventory/registers/CLAIMS.md",
          "sha256": "d9e9bc473ef516f25c3a311fea9bb30fce3cf55da957c2eaf677d596a57470ba",
          "line": 648,
          "locator": "| `c-586` |"
        }
      }
    ],
    "relationships": [],
    "corrections": [
      {
        "supersedes_id": "db-S141.null-maximum-3",
        "what_changed": "Three is q99; the 10,000-draw null maximum is five.",
        "ref": {
          "ref": "upstream:.inventory/registers/CLAIMS.md",
          "sha256": "d9e9bc473ef516f25c3a311fea9bb30fce3cf55da957c2eaf677d596a57470ba",
          "line": 648,
          "locator": "| `c-586` |"
        }
      }
    ],
    "decision_ids": [],
    "reproduction": {
      "mode": "read-only source inspection; no experiment run by this package",
      "instructions": "Open the linked evidence copies or excerpts to check the cited wording and measurements. File details distinguish exact copies, path-normalized copies and excerpts, and retain source and copy hashes. Some cited files remain private and are marked as such. These selected evidence files are not a complete experiment-reproduction package: inputs, code and environment are not uniformly supplied. No experiment was rerun to prepare this export.",
      "artifacts": [
        {
          "ref": "upstream:.inventory/registers/CLAIMS.md",
          "sha256": "d9e9bc473ef516f25c3a311fea9bb30fce3cf55da957c2eaf677d596a57470ba",
          "line": 648,
          "locator": "| `c-586` |"
        },
        {
          "ref": "lab:codex_lab/reviews/db_s141_package_intake_audit_2026-10-19.md",
          "sha256": "4026d5ec05fccc3313b4990c79c569cb79200ed56c98245cf4f76c7ecbb00d30"
        }
      ],
      "package_reference": {
        "path": "squire:db_s141_independent_nonbijective_witness_graph_20261019.zip",
        "sha256": "848132082bb91b2dc7ed06c1d227270ff2b6a5e034f3eacaafc6fc726b26c72a",
        "verification": "digest quoted from existing intake audit; ZIP not copied or rehashed in this pass"
      }
    },
    "dependence": "Transcriptions, catalogue entries and copied summaries are not independent confirmations. Repeated use of the manuscript and pipeline is shared evidence.",
    "attribution": "Simone Systems Research: Jon directing AI-assisted research; retain original authors and run owners in the cited artifacts.",
    "license": "No redistribution license asserted for laboratory artifacts. Third-party content is linked, not bundled.",
    "release_clearance": "cleared",
    "release_reason": "Selected Atlas publication authorized by Jon on 2026-10-19; existing scientific disposition unchanged. Source links, attribution, corrections and selected evidence copies retained; private archive excluded.",
    "visual_spec": "Show calibration scope and a q99=3 versus maximum=5 annotation; no Penn/Sloane image redistribution in this package."
  },
  {
    "id": "ATLAS-BRIDGES",
    "title": "Two parked routes have different outcomes",
    "claim": "Fontana s132 failed its frozen agreement gate. Egerton s133 is process-invalid: its read is preserved and unscored. Neither outcome decodes or disproves a meaning for Voynich.",
    "observation": "Fontana s132 failed its frozen agreement gate. Egerton s133 is process-invalid: its read is preserved and unscored. Neither outcome decodes or disproves a meaning for Voynich.",
    "interpretation": null,
    "type": "observation",
    "disposition": "s132 frozen gate FAIL; s133 PROCESS_INVALID and unscored; both parked",
    "scope": "The completed Fontana gate and invalid Egerton packet; later disposition overrides historical isolation-only acceptance.",
    "limitations": [
      "Do not present s133 as a failed scientific hypothesis or score its preserved read. Blind packets, answers and raw review conversations are excluded. Both routes remain parked."
    ],
    "alternatives": [
      "Gate failure and process invalidity have different meanings; neither licenses a broader negative claim."
    ],
    "folios": [],
    "evidence": [
      {
        "text": "Governing correction or disposition: | D-079 |. This governs interpretation of earlier results.",
        "ref": "upstream:.inventory/registers/DECISIONS.md",
        "sha256": "9b0f6a628e5390fa0928eff8cbdc770fe5fda4992953f99afcf55f5c417c1670",
        "line": 85,
        "locator": "| D-079 |",
        "canonical_id": "ATLAS-BRIDGES"
      },
      {
        "text": "Governing correction or disposition: | D-081 |. This governs interpretation of earlier results.",
        "ref": "upstream:.inventory/registers/DECISIONS.md",
        "sha256": "9b0f6a628e5390fa0928eff8cbdc770fe5fda4992953f99afcf55f5c417c1670",
        "line": 87,
        "locator": "| D-081 |",
        "canonical_id": "ATLAS-BRIDGES"
      },
      {
        "text": "Governing correction or disposition: | D-084 |. This governs interpretation of earlier results.",
        "ref": "upstream:.inventory/registers/DECISIONS.md",
        "sha256": "9b0f6a628e5390fa0928eff8cbdc770fe5fda4992953f99afcf55f5c417c1670",
        "line": 90,
        "locator": "| D-084 |",
        "canonical_id": "ATLAS-BRIDGES"
      },
      {
        "text": "Registered result and accepted scope for ATLAS-BRIDGES; scientific acceptance is separate from publication clearance.",
        "ref": "upstream:.inventory/registers/CLAIMS.md",
        "sha256": "d9e9bc473ef516f25c3a311fea9bb30fce3cf55da957c2eaf677d596a57470ba",
        "line": 693,
        "locator": "| `c-625` |",
        "canonical_id": "ATLAS-BRIDGES"
      },
      {
        "text": "Frozen Fontana reader-agreement output: the gate failed; this is not an Egerton score.",
        "ref": "upstream:runs/s132/results_s132_C1_agreement.txt",
        "sha256": "b741f2cbd7896933d96b34b2786fb662c5c1672aa24c445f2d8debf832c67d9c",
        "canonical_id": "ATLAS-BRIDGES"
      },
      {
        "text": "Current-at-export findings summary, including qualifications that supersede older narrative wording.",
        "ref": "upstream:workflow/FINDINGS-MAP.md",
        "sha256": "48490bea38a296a988c7b2488d324d0364d275c7bbb73278d85a502d96b7e061",
        "line": 16,
        "locator": "Egerton s133 is PROCESS_INVALID",
        "canonical_id": "ATLAS-BRIDGES"
      },
      {
        "text": "Frozen s132 gate: agreement must reach 0.95 on both lines in one attempt. The selected excerpt contains no reader answers.",
        "canonical_id": "c-625",
        "ref": "upstream:runs/s132/PROTOCOL.md",
        "sha256": "5d43d862d0dfc8785e7b91a8c2cbc16a5b61d1dca160c0577bd8be32a9926f2b",
        "line": 15,
        "locator": "0.95 on both lines"
      }
    ],
    "sources": [],
    "images": [],
    "numbers": [
      {
        "label": "s132 L05 reader agreement",
        "value": 0.9348,
        "ref": {
          "ref": "upstream:runs/s132/results_s132_C1_agreement.txt",
          "sha256": "b741f2cbd7896933d96b34b2786fb662c5c1672aa24c445f2d8debf832c67d9c"
        },
        "unit": "agreement"
      },
      {
        "label": "s132 L15 reader agreement",
        "value": 0.7755,
        "ref": {
          "ref": "upstream:runs/s132/results_s132_C1_agreement.txt",
          "sha256": "b741f2cbd7896933d96b34b2786fb662c5c1672aa24c445f2d8debf832c67d9c"
        },
        "unit": "agreement"
      },
      {
        "label": "Frozen s132 pass mark required on each line",
        "value": 0.95,
        "unit": "agreement",
        "ref": {
          "ref": "upstream:runs/s132/PROTOCOL.md",
          "sha256": "5d43d862d0dfc8785e7b91a8c2cbc16a5b61d1dca160c0577bd8be32a9926f2b",
          "line": 15,
          "locator": "0.95 on both lines"
        }
      }
    ],
    "relationships": [],
    "corrections": [
      {
        "supersedes_id": "s133.isolation-only-clearance",
        "what_changed": "D-084 process-invalid disposition controls; no scoring despite earlier isolation review.",
        "ref": {
          "ref": "upstream:.inventory/registers/DECISIONS.md",
          "sha256": "9b0f6a628e5390fa0928eff8cbdc770fe5fda4992953f99afcf55f5c417c1670",
          "line": 90,
          "locator": "| D-084 |"
        }
      }
    ],
    "decision_ids": [
      "D-079",
      "D-081",
      "D-084"
    ],
    "reproduction": {
      "mode": "read-only source inspection; no experiment run by this package",
      "instructions": "Open the linked evidence copies or excerpts to check the cited wording and measurements. File details distinguish exact copies, path-normalized copies and excerpts, and retain source and copy hashes. Some cited files remain private and are marked as such. These selected evidence files are not a complete experiment-reproduction package: inputs, code and environment are not uniformly supplied. No experiment was rerun to prepare this export.",
      "artifacts": [
        {
          "ref": "upstream:.inventory/registers/DECISIONS.md",
          "sha256": "9b0f6a628e5390fa0928eff8cbdc770fe5fda4992953f99afcf55f5c417c1670",
          "line": 85,
          "locator": "| D-079 |"
        },
        {
          "ref": "upstream:.inventory/registers/DECISIONS.md",
          "sha256": "9b0f6a628e5390fa0928eff8cbdc770fe5fda4992953f99afcf55f5c417c1670",
          "line": 87,
          "locator": "| D-081 |"
        },
        {
          "ref": "upstream:.inventory/registers/DECISIONS.md",
          "sha256": "9b0f6a628e5390fa0928eff8cbdc770fe5fda4992953f99afcf55f5c417c1670",
          "line": 90,
          "locator": "| D-084 |"
        },
        {
          "ref": "upstream:.inventory/registers/CLAIMS.md",
          "sha256": "d9e9bc473ef516f25c3a311fea9bb30fce3cf55da957c2eaf677d596a57470ba",
          "line": 693,
          "locator": "| `c-625` |"
        },
        {
          "ref": "upstream:runs/s132/results_s132_C1_agreement.txt",
          "sha256": "b741f2cbd7896933d96b34b2786fb662c5c1672aa24c445f2d8debf832c67d9c"
        },
        {
          "ref": "upstream:workflow/FINDINGS-MAP.md",
          "sha256": "48490bea38a296a988c7b2488d324d0364d275c7bbb73278d85a502d96b7e061",
          "line": 16,
          "locator": "Egerton s133 is PROCESS_INVALID"
        }
      ]
    },
    "dependence": "Transcriptions, catalogue entries and copied summaries are not independent confirmations. Repeated use of the manuscript and pipeline is shared evidence.",
    "attribution": "Simone Systems Research: Jon directing AI-assisted research; retain original authors and run owners in the cited artifacts.",
    "license": "No redistribution license asserted for laboratory artifacts. Third-party content is linked, not bundled.",
    "release_clearance": "cleared",
    "release_reason": "Selected Atlas publication authorized by Jon on 2026-10-19; existing scientific disposition unchanged. Source links, attribution, corrections and selected evidence copies retained; private archive excluded.",
    "visual_spec": "Two outcome cards: failed gate / invalid packet. No blind-study crops or captions."
  }
]